PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK17954.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family GRAS
Protein Properties Length: 596aa    MW: 66302.1 Da    PI: 6.2002
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK17954.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS328.41.4e-1002405951374
       GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
                l+++L ++Ae +++g+  laq +Larl++++sp g+p+qR+a+yf+eAL+  l++       +l+  + +    + ++ a+k+fsevsP+l+f+++t+Nq
  PK17954.1 240 LIDQLSKAAELIETGNPVLAQGILARLNHHVSPLGKPFQRAAFYFKEALQLLLHN-------SLALPPFN---LIFKIGAYKTFSEVSPVLQFANFTCNQ 329
                5789**************************************************9.......56666665...89************************* PP

       GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp..slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledl.eleeLrvk 197
                aIlea+eg +r+H+iDfdi++G+QW++++q+La R+++++  sl+iT+++sp+++++ el  t+e+L++fA+e+++ fe +++  +++++   +  L+++
  PK17954.1 330 AILEALEGFSRIHVIDFDIGYGGQWASFMQELALRNASAAggSLKITAFVSPSTHEEFELGFTHENLKHFAAEINLAFELEIVSLETFNSGsWPVPLHIS 429
                ************************************554445****************************************97777766524789**** PP

       GRAS 198 pgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnv 297
                ++Ea+aVnl +   + +  ++sl+     vL+++++lsPkvvv  e+ +d+++ +F +++++a++ ys l +sl+a    + e+ +k+E++ll+++i+++
  PK17954.1 430 EDEAIAVNLPITSLSSY--PLSLPL----VLRFLNQLSPKVVVSLERGSDRTDVPFPHQIIHAFHSYSGLIESLDAV-NVNLEALQKIEKFLLQPRIEKL 522
                **********9766666..677776....*********************************************665.4566999*************** PP

       GRAS 298 vacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                v ++ ++     et   Wr+ + ++GF+p+ +s+++++qa++l+++++++g++ve+++ sl l+W++++L+svSaWr
  PK17954.1 523 VLNRYRS----PETTPPWRSSFLNSGFSPAVFSNFTESQAECLVQRTPVRGFHVEKKQSSLSLCWQRKELISVSAWR 595
                *****99....*****************************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098544.959214575IPR005202Transcription factor GRAS
PfamPF035144.7E-98240595IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0048768Biological Processroot hair cell tip growth
GO:0051301Biological Processcell division
Sequence ? help Back to Top
Protein Sequence    Length: 596 aa     Download sequence    Send to blast
MEDWESVLAE SPGHDQSILR LMMADVDDPS LGLNRLLQSG SVSSSQEMEF NGGGFQVVDQ  60
GYENLMSSII DPPSLQGTTC SDFPFNSSSN SQNNNSLSPM FSTSANNLMP ASLSPLVFHQ  120
QQHQQQQLVH SVDANPQMVI NQNQPHLVMP LTYAQLQEHH VMSQPPAKRL NTGGVRSNYQ  180
LQKVQFPNSG QELFVRGQEQ QLQLFHQQRP TMAVSKQKML SPGAGAGDEL ANHHQLQQAL  240
IDQLSKAAEL IETGNPVLAQ GILARLNHHV SPLGKPFQRA AFYFKEALQL LLHNSLALPP  300
FNLIFKIGAY KTFSEVSPVL QFANFTCNQA ILEALEGFSR IHVIDFDIGY GGQWASFMQE  360
LALRNASAAG GSLKITAFVS PSTHEEFELG FTHENLKHFA AEINLAFELE IVSLETFNSG  420
SWPVPLHISE DEAIAVNLPI TSLSSYPLSL PLVLRFLNQL SPKVVVSLER GSDRTDVPFP  480
HQIIHAFHSY SGLIESLDAV NVNLEALQKI EKFLLQPRIE KLVLNRYRSP ETTPPWRSSF  540
LNSGFSPAVF SNFTESQAEC LVQRTPVRGF HVEKKQSSLS LCWQRKELIS VSAWRC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A4e-3225559518375GRAS family transcription factor containing p
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015889409.10.0PREDICTED: scarecrow-like protein 6
SwissprotO813161e-151SCL6_ARATH; Scarecrow-like protein 6
TrEMBLM5X7H70.0M5X7H7_PRUPE; Uncharacterized protein
STRINGVIT_15s0048g00270.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31833170
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.11e-141GRAS family protein